About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_28713214_28713977_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
28713214 - 28713977
Intron Length:
764

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAAACAT
U12 Branch Point Sequence:
AAAACATTTACT
Flanking Amino Acid:
FNYSSFQMVLNYNLESSIWN
Intron Amino Acid Position:
338

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
84.2
26.3
Major BPS
54.4
0.11
1
61.4
34.3
Major PPT
88.2
0.86
0.6
81.7
30.3
Minor 5ss
36.1
-1.6
3.3
49.4
41.3
Minor BPS
48.9
-0
1.9
67.09
42.6

Associated Gene:

Gene:
ATRNL1
Ensembl Gene ID:
ENSAPLG00000006869
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026820
28652795 - 28942943
290149
ENSAPLT00000046926
28652795 - 29144602
491808
ENSAPLT00000026024
28652795 - 29144602
491808
ENSAPLT00000044897
28653737 - 29049692
395956
ENSAPLT00000007205
28653737 - 29107578
453842
ENSAPLT00000042540
28653737 - 29017416
363680
ENSAPLT00000033645
28652795 - 28990031
337237
ENSAPLT00000047672
28653737 - 29091421
437685