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Intron Name: Anas_platyrhynchos_platyrhynchos_6_28726325_28733894_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

28726325 - 28733894

Intron Length:

7570

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCA|GTAAGTCAC

5'SS Class:

major

3'SS Sequence:

ACATTTTTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTACAT

U12 Branch Point Sequence:

TCTTCTGTACAT

Flanking Amino Acid:

YTSIVQEYYIRSNSWLVPET

Intron Amino Acid Position:

453

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.2

0.59

1.1

66.4

39.5

Major BPS

67.6

0.44

1.2

Major PPT

81.5

0.71

0.9

73.2

41.2

Minor 5ss

36.7

-1.5

50.3

40.1

Minor BPS

47.7

-0.1

2.3

72.3

Associated Gene:

Gene:

ATRNL1

Ensembl Gene ID:

ENSAPLG00000006869

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033645

28652795 - 28990031

337237

ENSAPLT00000047672

28653737 - 29091421

437685

ENSAPLT00000026820

28652795 - 28942943

290149

ENSAPLT00000046926

28652795 - 29144602

491808

ENSAPLT00000026024

28652795 - 29144602

491808

ENSAPLT00000044897

28653737 - 29049692

395956

ENSAPLT00000007205

28653737 - 29107578

453842

ENSAPLT00000042540

28653737 - 29017416

363680