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Intron Name: Anas_platyrhynchos_platyrhynchos_6_28734079_28736584_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

28734079 - 28736584

Intron Length:

2506

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGTCAG

5'SS Class:

strong_major

3'SS Sequence:

TTCTATTTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTATAT

U12 Branch Point Sequence:

GTTTATATAAGT

Flanking Amino Acid:

LYKYEVNTRTWTILKESGFA

Intron Amino Acid Position:

514

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.8

0.84

0.9

70.6

41.3

Major BPS

79.2

0.73

75.3

39.4

Major PPT

88.8

0.87

0.7

84.2

30.4

Minor 5ss

33.7

-1.9

2.9

38.1

40.9

Minor BPS

49.5

0.04

2.1

74.67

41.8

Associated Gene:

Gene:

ATRNL1

Ensembl Gene ID:

ENSAPLG00000006869

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026820

28652795 - 28942943

290149

ENSAPLT00000046926

28652795 - 29144602

491808

ENSAPLT00000026024

28652795 - 29144602

491808

ENSAPLT00000044897

28653737 - 29049692

395956

ENSAPLT00000007205

28653737 - 29107578

453842

ENSAPLT00000042540

28653737 - 29017416

363680

ENSAPLT00000033645

28652795 - 28990031

337237

ENSAPLT00000047672

28653737 - 29091421

437685