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Intron Name: Anas_platyrhynchos_platyrhynchos_6_28748428_28750319_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

28748428 - 28750319

Intron Length:

1892

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTAAATGAA

5'SS Class:

major

3'SS Sequence:

TTTTTCCTAATAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATTTAC

U12 Branch Point Sequence:

TTTTTCCTAATA

Flanking Amino Acid:

RFGHTAVVSNGSMYIFGGFS

Intron Amino Acid Position:

594

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.2

0.64

70.9

Major BPS

78.8

0.71

0.9

69.7

37.1

Major PPT

81.1

0.7

0.8

78.5

28.9

Minor 5ss

30.9

-2.2

3.2

31.1

Minor BPS

71.9

0.68

1.6

83.62

30.2

Associated Gene:

Gene:

ATRNL1

Ensembl Gene ID:

ENSAPLG00000006869

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026024

28652795 - 29144602

491808

ENSAPLT00000044897

28653737 - 29049692

395956

ENSAPLT00000007205

28653737 - 29107578

453842

ENSAPLT00000042540

28653737 - 29017416

363680

ENSAPLT00000033645

28652795 - 28990031

337237

ENSAPLT00000047672

28653737 - 29091421

437685

ENSAPLT00000026820

28652795 - 28942943

290149

ENSAPLT00000046926

28652795 - 29144602

491808