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Intron Name: Anas_platyrhynchos_platyrhynchos_6_28753047_28761401_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

28753047 - 28761401

Intron Length:

8355

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTGAGTCTC

5'SS Class:

strong_major

3'SS Sequence:

TTCGTTTTTGTAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATATAAT

U12 Branch Point Sequence:

TGACATATAATA

Flanking Amino Acid:

CISANSNCSMSVKNYTKCHV

Intron Amino Acid Position:

704

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.6

0.79

0.9

36.6

Major BPS

0.72

78.4

31.2

Major PPT

84.2

0.77

0.7

80.5

31.5

Minor 5ss

33.5

-1.9

41.5

39.2

Minor BPS

46.7

-0.2

1.7

56.78

35.7

Associated Gene:

Gene:

ATRNL1

Ensembl Gene ID:

ENSAPLG00000006869

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026820

28652795 - 28942943

290149

ENSAPLT00000046926

28652795 - 29144602

491808

ENSAPLT00000026024

28652795 - 29144602

491808

ENSAPLT00000044897

28653737 - 29049692

395956

ENSAPLT00000007205

28653737 - 29107578

453842

ENSAPLT00000042540

28653737 - 29017416

363680

ENSAPLT00000033645

28652795 - 28990031

337237

ENSAPLT00000047672

28653737 - 29091421

437685