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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_28763039_28775181_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28763039 - 28775181
Intron Length:
12143

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTTGA
5'SS Class:
strong_major
3'SS Sequence:
TTCTGCTTCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
ATTATCTTACAT
Flanking Amino Acid:
LDEIQKYTLQKISPWVGLRK
Intron Amino Acid Position:
809

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1.1
75
38.1
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
77
0.61
0.8
72.2
32.6
Minor 5ss
45.1
-0.5
2.6
59
45.4
Minor BPS
56.9
0.29
1.7
76.12
40.2

Associated Gene:

Gene:
ATRNL1
Ensembl Gene ID:
ENSAPLG00000006869
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026820
28652795 - 28942943
290149
ENSAPLT00000046926
28652795 - 29144602
491808
ENSAPLT00000026024
28652795 - 29144602
491808
ENSAPLT00000044897
28653737 - 29049692
395956
ENSAPLT00000007205
28653737 - 29107578
453842
ENSAPLT00000042540
28653737 - 29017416
363680
ENSAPLT00000033645
28652795 - 28990031
337237
ENSAPLT00000047672
28653737 - 29091421
437685