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Intron Name: Anas_platyrhynchos_platyrhynchos_6_28775396_28777841_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

28775396 - 28777841

Intron Length:

2446

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCG|GTAAGCAAT

5'SS Class:

strong_major

3'SS Sequence:

GATTGTCTTTCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AATTTAT

U12 Branch Point Sequence:

TTTTTTGTGATT

Flanking Amino Acid:

ADGLVCEKPVVSPNQNARPC

Intron Amino Acid Position:

880

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.8

0.77

78.3

37.9

Major BPS

79.9

0.74

0.9

69.7

37.1

Major PPT

78.1

0.63

0.9

73.8

41.4

Minor 5ss

41.5

-0.9

58.5

45.8

Minor BPS

0.3

81.5

34.7

Associated Gene:

Gene:

ATRNL1

Ensembl Gene ID:

ENSAPLG00000006869

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026820

28652795 - 28942943

290149

ENSAPLT00000046926

28652795 - 29144602

491808

ENSAPLT00000026024

28652795 - 29144602

491808

ENSAPLT00000044897

28653737 - 29049692

395956

ENSAPLT00000007205

28653737 - 29107578

453842

ENSAPLT00000042540

28653737 - 29017416

363680

ENSAPLT00000033645

28652795 - 28990031

337237

ENSAPLT00000047672

28653737 - 29091421

437685