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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_28787800_28807839_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28787800 - 28807839
Intron Length:
20040

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
TTCGATTTTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTATAAT
U12 Branch Point Sequence:
TCTCTTTCGATT
Flanking Amino Acid:
GDPTNGGQCTACTCSGHANI
Intron Amino Acid Position:
1062

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
69.7
43.7
Major BPS
70.1
0.5
1.3
72.3
40.4
Major PPT
78.1
0.63
0.9
73.1
37
Minor 5ss
43.2
-0.7
2.9
55.9
48.3
Minor BPS
49.7
0.06
1.5
67.54
38

Associated Gene:

Gene:
ATRNL1
Ensembl Gene ID:
ENSAPLG00000006869
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007205
28653737 - 29107578
453842
ENSAPLT00000042540
28653737 - 29017416
363680
ENSAPLT00000033645
28652795 - 28990031
337237
ENSAPLT00000047672
28653737 - 29091421
437685
ENSAPLT00000026820
28652795 - 28942943
290149
ENSAPLT00000046926
28652795 - 29144602
491808
ENSAPLT00000026024
28652795 - 29144602
491808
ENSAPLT00000044897
28653737 - 29049692
395956