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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_2879495_2883638_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2879495 - 2883638
Intron Length:
4144

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCGGGGC
5'SS Class:
major
3'SS Sequence:
GTTTGATTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TTACGTTTGATT
Flanking Amino Acid:
KKRSGFRDRKVMEYENRIRA
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1
59.7
39.4
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
75.3
0.57
1
66
44.4
Minor 5ss
23.1
-3.1
3.4
32.1
42.7
Minor BPS
53.4
0.19
1.8
72.77
38.6

Associated Gene:

Gene:
MICU1
Ensembl Gene ID:
ENSAPLG00000008509
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008856
2867759 - 2934111
66353
ENSAPLT00000008855
2867759 - 2934111
66353
ENSAPLT00000022253
2867759 - 2919625
51867