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Intron Name: Anas_platyrhynchos_platyrhynchos_6_28807934_28835929_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

28807934 - 28835929

Intron Length:

27996

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACT|GTGAGTACA

5'SS Class:

major

3'SS Sequence:

TTTCCCCCTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTTTAAT

U12 Branch Point Sequence:

TTTAATGGGAAT

Flanking Amino Acid:

TKGIKGDQCQLCDSENRYLG

Intron Amino Acid Position:

1093

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.6

0.51

1.1

70.1

35.6

Major BPS

81.8

0.79

1.1

34.5

Major PPT

83.8

0.76

0.7

77.9

23.9

Minor 5ss

33.5

-1.9

2.7

44.7

42.7

Minor BPS

39.2

-0.7

2.2

62.59

41.3

Associated Gene:

Gene:

ATRNL1

Ensembl Gene ID:

ENSAPLG00000006869

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026820

28652795 - 28942943

290149

ENSAPLT00000046926

28652795 - 29144602

491808

ENSAPLT00000026024

28652795 - 29144602

491808

ENSAPLT00000044897

28653737 - 29049692

395956

ENSAPLT00000007205

28653737 - 29107578

453842

ENSAPLT00000042540

28653737 - 29017416

363680

ENSAPLT00000033645

28652795 - 28990031

337237

ENSAPLT00000047672

28653737 - 29091421

437685