About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_2883802_2891635_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2883802 - 2891635
Intron Length:
7834

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CATTTTTTAAAA
Flanking Amino Acid:
SITPNEKQPENLGLDQFIVK
Intron Amino Acid Position:
170

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
78.6
28.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
94.1
0.99
0.5
92.8
16.8
Minor 5ss
34.7
-1.7
3.2
43.7
38.1
Minor BPS
64.9
0.46
1.4
69.01
37.3

Associated Gene:

Gene:
MICU1
Ensembl Gene ID:
ENSAPLG00000008509
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022253
2867759 - 2919625
51867
ENSAPLT00000008855
2867759 - 2934111
66353