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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_28858941_28859950_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28858941 - 28859950
Intron Length:
1010

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TTATTGTTATTG
Flanking Amino Acid:
LNITWSIGSTAGTISGEEIP
Intron Amino Acid Position:
1169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.9
76.9
38.6
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
95.8
1.03
0.5
96.6
11.7
Minor 5ss
32.8
-2
3.7
45.9
49.3
Minor BPS
47.4
-0.3
2.3
59.24
43.2

Associated Gene:

Gene:
ATRNL1
Ensembl Gene ID:
ENSAPLG00000006869
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026820
28652795 - 28942943
290149
ENSAPLT00000046926
28652795 - 29144602
491808
ENSAPLT00000026024
28652795 - 29144602
491808
ENSAPLT00000044897
28653737 - 29049692
395956
ENSAPLT00000007205
28653737 - 29107578
453842
ENSAPLT00000042540
28653737 - 29017416
363680
ENSAPLT00000033645
28652795 - 28990031
337237
ENSAPLT00000047672
28653737 - 29091421
437685