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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_28925218_28941699_F

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28925218 - 28941699
Intron Length:
16482

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTAATA
5'SS Class:
major
3'SS Sequence:
GCCCTTTATTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACAAAT
U12 Branch Point Sequence:
CTGCCCTTTATT
Flanking Amino Acid:
QTCWASRRRERVSRRKK*
Intron Amino Acid Position:
1269

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
75.3
33.9
Major BPS
69.5
0.48
1
73.5
28.6
Major PPT
74.9
0.56
0.9
72.6
36.7
Minor 5ss
43.2
-0.7
2.8
58
46.2
Minor BPS
60
0.4
1.7
73.22
43.8

Associated Gene:

Gene:
ATRNL1
Ensembl Gene ID:
ENSAPLG00000006869
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026820
28652795 - 28942943
290149