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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_28925218_28986209_F

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28925218 - 28986209
Intron Length:
60992

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTAATA
5'SS Class:
major
3'SS Sequence:
TTTATCCTGGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTTCTTTTATC
Flanking Amino Acid:
QTCWASRRREQNSWEASRFT
Intron Amino Acid Position:
1269

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
75.3
33.9
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
77.3
0.61
1
73.8
36.7
Minor 5ss
43.2
-0.7
2.8
58
46.2
Minor BPS
72.5
0.69
1.5
82.19
31.8

Associated Gene:

Gene:
ATRNL1
Ensembl Gene ID:
ENSAPLG00000006869
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046926
28652795 - 29144602
491808
ENSAPLT00000042540
28653737 - 29017416
363680
ENSAPLT00000033645
28652795 - 28990031
337237