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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_28925218_29088784_F

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28925218 - 29088784
Intron Length:
163567

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTAATA
5'SS Class:
major
3'SS Sequence:
CTTCCTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
CTTTACATAAGT
Flanking Amino Acid:
QTCWASRRREGAPKPIAIEP
Intron Amino Acid Position:
1269

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
75.3
33.9
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
88.4
0.86
0.7
83
25.4
Minor 5ss
43.2
-0.7
2.8
58
46.2
Minor BPS
53
0.17
2.1
77.86
44.1

Associated Gene:

Gene:
ATRNL1
Ensembl Gene ID:
ENSAPLG00000006869
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047672
28653737 - 29091421
437685
ENSAPLT00000026024
28652795 - 29144602
491808
ENSAPLT00000007205
28653737 - 29107578
453842