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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_28986297_28989872_F

Intron Information:

Intron Rank:
27
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
28986297 - 28989872
Intron Length:
3576

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGTGT
5'SS Class:
major
3'SS Sequence:
CCACGTAATATAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
ATAACCTTAACT
Flanking Amino Acid:
ESAEHPKTIQKI*
Intron Amino Acid Position:
1298

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
72.3
39.7
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
57.5
0.17
1
50.5
37
Minor 5ss
38.5
-1.3
3.4
56.5
47.6
Minor BPS
80.9
1.05
1.1
88.74
35.2

Associated Gene:

Gene:
ATRNL1
Ensembl Gene ID:
ENSAPLG00000006869
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033645
28652795 - 28990031
337237