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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_29015660_29088784_F

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29015660 - 29088784
Intron Length:
73125

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGAACA
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
CTTTACATAAGT
Flanking Amino Acid:
QTDFLRGPLEGAPKPIAIEP
Intron Amino Acid Position:
1334

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1
74.4
36
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
88.4
0.86
0.7
83
25.4
Minor 5ss
32.4
-2
3.1
40.9
45.1
Minor BPS
53
0.17
2.1
77.86
44.1

Associated Gene:

Gene:
ATRNL1
Ensembl Gene ID:
ENSAPLG00000006869
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046926
28652795 - 29144602
491808