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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_29088900_29090571_F

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29088900 - 29090571
Intron Length:
1672

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCTC
5'SS Class:
strong_major
3'SS Sequence:
CTACTTCGTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TATTTTCTACTT
Flanking Amino Acid:
SSGVPPPGQSGSKANRNV*
Intron Amino Acid Position:
1307

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
76.9
38.6
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
75
0.56
0.9
73
37.1
Minor 5ss
35.3
-1.7
3.4
50.1
46.5
Minor BPS
49.7
0.06
1.9
72.85
38.7

Associated Gene:

Gene:
ATRNL1
Ensembl Gene ID:
ENSAPLG00000006869
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047672
28653737 - 29091421
437685