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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_29088900_29107564_F

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29088900 - 29107564
Intron Length:
18665

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCTC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACAAAT
U12 Branch Point Sequence:
CTTTCTACAAAT
Flanking Amino Acid:
SSGVPPPGQSAAGA*
Intron Amino Acid Position:
1307

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
76.9
38.6
Major BPS
69.5
0.48
1
73.5
28.6
Major PPT
92.8
0.96
0.6
88.6
20.9
Minor 5ss
35.3
-1.7
3.4
50.1
46.5
Minor BPS
50.1
0.08
1.9
74.48
42.1

Associated Gene:

Gene:
ATRNL1
Ensembl Gene ID:
ENSAPLG00000006869
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007205
28653737 - 29107578
453842