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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_29088900_29144477_F

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29088900 - 29144477
Intron Length:
55578

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCTC
5'SS Class:
strong_major
3'SS Sequence:
ATTTATCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTCCCTTTATT
Flanking Amino Acid:
SSGVPPPGQSGLAIASALID
Intron Amino Acid Position:
1307

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
76.9
38.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
84
0.76
0.8
77.3
36.1
Minor 5ss
35.3
-1.7
3.4
50.1
46.5
Minor BPS
73.8
0.83
1.5
89.88
33.9

Associated Gene:

Gene:
ATRNL1
Ensembl Gene ID:
ENSAPLG00000006869
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046926
28652795 - 29144602
491808
ENSAPLT00000026024
28652795 - 29144602
491808