About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_2919573_2928242_F


Intron Information:

Intron Rank:
7

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
2919573 - 2928242

Intron Length:
8670

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
GAG|GTTTGACTT

5'SS Class:
major

3'SS Sequence:
TTCCCCCTTCCAG|T

3'SS Class:
strong_PPT

U2 Branch Point Sequence:
TTTTTAA

U12 Branch Point Sequence:
CCTTTTTAACGC

Flanking Amino Acid:
KLQHDILKLEFERHDPVDGR

Intron Amino Acid Position:
317

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
71.8
0.52
1.2
69.3
41.1

Major BPS
87.3
0.93
0.8
78
36.5

Major PPT
81.9
0.72
0.7
73.1
31.7

Minor 5ss
40.3
-1.1
3.1
57.3
46.8

Minor BPS
41.4
-0.6
2
47.92
43.1

Associated Gene:

Gene:
MICU1

Ensembl Gene ID:

Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

2867759 - 2934111
66353

2867759 - 2934111
66353