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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_29236343_29252487_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
29236343 - 29252487
Intron Length:
16145

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATAG
5'SS Class:
strong_major
3'SS Sequence:
TTTCATGTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGATTTTTAAAG
Flanking Amino Acid:
QESCKKNYICRSRLADFFTN
Intron Amino Acid Position:
256

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
77.7
33.3
Major BPS
100
1.24
0.5
100
0
Major PPT
82.4
0.73
0.9
76.8
37
Minor 5ss
37.3
-1.4
3
46.6
48.7
Minor BPS
60.9
0.2
1.5
61.86
39.9

Associated Gene:

Gene:
GFRA1
Ensembl Gene ID:
ENSAPLG00000007711
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008010
29201892 - 29351717
149826
ENSAPLT00000008008
29201892 - 29351494
149603