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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_2932908_2934016_F

Intron Information:

Intron Rank:
9
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
2932908 - 2934016
Intron Length:
1109

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTAAAA
5'SS Class:
major
3'SS Sequence:
TACAGTATTCAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TATTCCCTGAGA
Flanking Amino Acid:
YHMAGASLDKVPLFVTQVNK
Intron Amino Acid Position:
399

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
71.5
33.3
Major BPS
78.6
0.71
1
78.6
31
Major PPT
57.7
0.17
1.2
53.3
44.7
Minor 5ss
38.9
-1.2
2.8
48.9
46.9
Minor BPS
56.7
0.2
2
72.38
39.3

Associated Gene:

Gene:
MICU1
Ensembl Gene ID:
ENSAPLG00000008509
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008856
2867759 - 2934111
66353
ENSAPLT00000008855
2867759 - 2934111
66353