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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_29340402_29351434_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
5UTR
Intron Coordinates:
29340402 - 29351434
Intron Length:
11033

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTACA
5'SS Class:
strong_major
3'SS Sequence:
TGTGAACTTGGAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
CCTCCCTCGATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
82.6
29.6
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
49.7
-0
1.7
55.3
44.5
Minor 5ss
36.1
-1.6
2.6
44
43
Minor BPS
54.7
0.23
1.6
68.6
42.8

Associated Gene:

Gene:
GFRA1
Ensembl Gene ID:
ENSAPLG00000007711
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008010
29201892 - 29351717
149826