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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_29351495_29351706_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
29351495 - 29351706
Intron Length:
212

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGGCA
5'SS Class:
major
3'SS Sequence:
AAATTGTTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TTTCTATCAAAT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
66.7
39.1
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
73.2
0.52
1
65.4
44.5
Minor 5ss
28.1
-2.5
3.6
38.3
46.9
Minor BPS
50.5
0.1
1.9
76.46
39.3

Associated Gene:

Gene:
GFRA1
Ensembl Gene ID:
ENSAPLG00000007711
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008010
29201892 - 29351717
149826