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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_2936234_2938253_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2936234 - 2938253
Intron Length:
2020

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTTATTACT
5'SS Class:
major
3'SS Sequence:
TGTTTTTGTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
TTCTTTGTGATG
Flanking Amino Acid:
WIISSGFEEEDLFSSSKTVK
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.2
0.36
1.2
72.2
37
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
81.1
0.7
0.9
81.2
36.5
Minor 5ss
36.5
-1.5
2.6
46.3
35
Minor BPS
47.1
-0.3
2
56.54
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004152
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021760
2936024 - 2952849
16826