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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_29362448_29362669_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29362448 - 29362669
Intron Length:
222

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGCCCC
5'SS Class:
major
3'SS Sequence:
TGTTGTGTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTAAC
U12 Branch Point Sequence:
ATGTGCTTACGG
Flanking Amino Acid:
AGEKRRLIQQAKFDINRSHE
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.3
61
42
Major BPS
65.7
0.39
1.2
67.4
36.7
Major PPT
79.2
0.66
1
72.9
42.2
Minor 5ss
34.6
-1.8
2.9
43.6
43.6
Minor BPS
45
-0.5
2.3
52.95
47.8

Associated Gene:

Gene:
CCDC172
Ensembl Gene ID:
ENSAPLG00000008158
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008462
29362165 - 29382385
20221