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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_29365895_29367380_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
29365895 - 29367380
Intron Length:
1486

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTATGTTTC
5'SS Class:
weak_major
3'SS Sequence:
TTCTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTCATCTGAATA
Flanking Amino Acid:
NQKSILHKNFTDAKRKMTEE
Intron Amino Acid Position:
95

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.8
0.47
1.1
69.6
35.4
Major BPS
100
1.24
0.5
100
0
Major PPT
95.9
1.03
0.5
95.6
15.1
Minor 5ss
62
0.41
2.2
75.6
33.9
Minor BPS
60.2
0.32
1.5
68.41
38.2

Associated Gene:

Gene:
CCDC172
Ensembl Gene ID:
ENSAPLG00000008158
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008462
29362165 - 29382385
20221