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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_29370736_29380712_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
29370736 - 29380712
Intron Length:
9977

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGAACATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TGTTTTTGAACA
Flanking Amino Acid:
EKPQTDPECLRLKKELENYR
Intron Amino Acid Position:
218

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.8
82.4
28.6
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
71
0.47
0.9
66.7
38.5
Minor 5ss
35
-1.7
3.5
49.9
46.6
Minor BPS
68.6
0.58
1.3
76.57
34.1

Associated Gene:

Gene:
CCDC172
Ensembl Gene ID:
ENSAPLG00000008158
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008462
29362165 - 29382385
20221