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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_29380801_29381647_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29380801 - 29381647
Intron Length:
847

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGCCAT
5'SS Class:
major
3'SS Sequence:
TTCTGTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAA
U12 Branch Point Sequence:
TTTTCTGTAATT
Flanking Amino Acid:
LRTEIEILQMKLSQKKSSDK
Intron Amino Acid Position:
248

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1
63.2
42.6
Major BPS
74.2
0.6
0.9
75.7
28
Major PPT
87.7
0.85
0.8
80.2
37.3
Minor 5ss
45.8
-0.4
2.9
61.4
44.5
Minor BPS
70.8
0.73
2
91.31
32.6

Associated Gene:

Gene:
CCDC172
Ensembl Gene ID:
ENSAPLG00000008158
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008462
29362165 - 29382385
20221