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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_29403769_29405331_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29403769 - 29405331
Intron Length:
1563

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGACAC
5'SS Class:
strong_major
3'SS Sequence:
TCGTGTGTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTAACAT
U12 Branch Point Sequence:
ATTCCCAGAACA
Flanking Amino Acid:
TTLFLLDAATGREVCYERLG
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
75.1
35.1
Major BPS
58.7
0.22
1.2
67
38
Major PPT
69.7
0.44
1
60.8
44.7
Minor 5ss
32.3
-2
3.1
41.7
45
Minor BPS
58.8
0.27
1.8
74.05
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028551
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037616
29401797 - 29417472
15676
ENSAPLT00000037313
29401797 - 29417472
15676