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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_29405487_29408484_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29405487 - 29408484
Intron Length:
2998

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
TCATACCCGACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CTTTTCATACCC
Flanking Amino Acid:
YTRDNTMKYQFMFHVEDVNC
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
77.9
29.9
Major BPS
100
1.24
0.5
100
0
Major PPT
63.8
0.31
1
58.1
38
Minor 5ss
35.5
-1.6
3
44.2
37.3
Minor BPS
54.6
0.12
1.9
70.45
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028551
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037616
29401797 - 29417472
15676