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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_29408620_29409084_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29408620 - 29409084
Intron Length:
465

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACAAGTA
5'SS Class:
major
3'SS Sequence:
ACATCTTTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
CTTTCCATACAT
Flanking Amino Acid:
ELVYLVNLLEKDYGYSPANV
Intron Amino Acid Position:
156

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1
68.7
36.4
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
74.5
0.55
0.9
68.3
36.6
Minor 5ss
32.3
-2
3.7
47
48.4
Minor BPS
54.1
0.21
2
78.17
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028551
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037313
29401797 - 29417472
15676
ENSAPLT00000037616
29401797 - 29417472
15676