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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_29410644_29413063_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29410644 - 29413063
Intron Length:
2420

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
GGCTTTCTCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATTGCTCTAATC
Flanking Amino Acid:
TARDINDLMRAYRSIGCGHK
Intron Amino Acid Position:
273

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
100
1.18
0.6
100
0
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
69.8
0.45
0.9
61.7
40
Minor 5ss
41.7
-0.9
2.9
59.7
44.8
Minor BPS
56.8
0.19
1.7
69.03
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028551
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037616
29401797 - 29417472
15676
ENSAPLT00000037313
29401797 - 29417472
15676