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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_2941204_2942159_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2941204 - 2942159
Intron Length:
956

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCCACAGTG
5'SS Class:
major
3'SS Sequence:
CTTAATTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
GTTCTCTTAATT
Flanking Amino Acid:
QSTLLPSASKEKVKPAQAPP
Intron Amino Acid Position:
235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1.2
65.2
43.4
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
82.7
0.74
0.9
76.6
37
Minor 5ss
24.7
-2.9
4.1
38.5
46.5
Minor BPS
76.7
0.92
1.1
85.97
33.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004152
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021760
2936024 - 2952849
16826