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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_2941213_2942159_F

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
2941213 - 2942159
Intron Length:
947

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTACCTTCT
5'SS Class:
weak_major
3'SS Sequence:
CTTAATTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
GTTCTCTTAATT
Flanking Amino Acid:
LLPSASKATVEKVKPAQAPP
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.1
0.38
1.2
65.2
41.4
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
82.7
0.74
0.9
76.6
37
Minor 5ss
47.5
-0.2
2.8
65.4
40.8
Minor BPS
76.7
0.92
1.1
85.97
33.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004152
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004317
2936055 - 2956553
20499