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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_29413180_29414656_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29413180 - 29414656
Intron Length:
1477

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
TATTTTCCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
CATGTTTTAACA
Flanking Amino Acid:
QCETYRDFISGVCFPCQKER
Intron Amino Acid Position:
312

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
79.3
34.5
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
86.2
0.81
0.8
78.2
36
Minor 5ss
42.5
-0.8
2.8
60.5
37.7
Minor BPS
63.7
0.43
1.4
67.28
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028551
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037616
29401797 - 29417472
15676
ENSAPLT00000037313
29401797 - 29417472
15676