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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_29416025_29416496_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
29416025 - 29416496
Intron Length:
472

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTTGGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTTCATTTATA
Flanking Amino Acid:
NGIRRKYTIDTGTFKPGNTY
Intron Amino Acid Position:
392

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1.2
87.1
30
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
85.4
0.8
0.9
83.9
31
Minor 5ss
40.7
-1
2.8
50.6
39.2
Minor BPS
60.1
0.31
1.9
74.87
35.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028551
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037616
29401797 - 29417472
15676
ENSAPLT00000037313
29401797 - 29417472
15676