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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_29430256_29431794_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29430256 - 29431794
Intron Length:
1539

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGACATTT
5'SS Class:
major
3'SS Sequence:
TGTTTACACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAC
U12 Branch Point Sequence:
AACAACTTGATT
Flanking Amino Acid:
YTRETGNNSQVISAINSSTI
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1.1
77.6
33.4
Major BPS
72.8
0.57
1
81
30.3
Major PPT
72.3
0.5
1
66.4
38.9
Minor 5ss
44
-0.7
3.2
64.8
46.5
Minor BPS
51.1
0.11
1.5
63.96
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008405
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008724
29427402 - 29443236
15835