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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_29431921_29433292_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29431921 - 29433292
Intron Length:
1372

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGAGAC
5'SS Class:
major
3'SS Sequence:
GTTCCCACCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTAAAT
U12 Branch Point Sequence:
GTTTCCTTAAAT
Flanking Amino Acid:
KSGWVVEMCLLLLEAENVNC
Intron Amino Acid Position:
112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
63.9
34.3
Major BPS
70
0.5
1.1
76.9
32.8
Major PPT
70.8
0.47
0.9
67
34
Minor 5ss
37
-1.5
3.3
46.5
43.6
Minor BPS
84.7
1.17
1.2
94.63
31.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008405
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008724
29427402 - 29443236
15835