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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_29433428_29435252_F

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
29433428 - 29435252
Intron Length:
1825

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAGAT
5'SS Class:
strong_major
3'SS Sequence:
CCACAACGATCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
TCTCCCTCCACA
Flanking Amino Acid:
EVAYFIKTLQKLFRYSPCEI
Intron Amino Acid Position:
157

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
77.5
30.5
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
51.4
0.03
1
47.9
38.9
Minor 5ss
31.4
-2.1
3.5
46.6
48.7
Minor BPS
53.8
0.11
2
69.11
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008405
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008724
29427402 - 29443236
15835