Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_29435362_29435945_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

29435362 - 29435945

Intron Length:

584

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGCTGC

5'SS Class:

major

3'SS Sequence:

TTTTTTGTTAAAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCCTGAT

U12 Branch Point Sequence:

TTTTTGTTAAAG

Flanking Amino Acid:

RRIRGIRRITGLDPAGPYFE

Intron Amino Acid Position:

193

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.4

0.67

1.1

64.1

43.4

Major BPS

78.8

0.71

67.6

40.6

Major PPT

80.5

0.69

82.2

33.3

Minor 5ss

42.8

-0.8

3.2

58.8

46.1

Minor BPS

58.7

0.14

2.2

72.05

40.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000008405

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008724

29427402 - 29443236

15835