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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_29436276_29437010_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29436276 - 29437010
Intron Length:
735

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCGTA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCCCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTCTCCCAACA
Flanking Amino Acid:
KQNDFEALIADATIFGGCHH
Intron Amino Acid Position:
273

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
81.5
32.7
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
78.7
0.65
0.8
74.5
29.3
Minor 5ss
39.9
-1.1
3.4
55.3
48.9
Minor BPS
54.9
0.15
1.9
73.95
37.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008405
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008724
29427402 - 29443236
15835