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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_29437130_29437978_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29437130 - 29437978
Intron Length:
849

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
ATATCTTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TCCTCATTAACC
Flanking Amino Acid:
PCESYKSYEAGECFPCPQEG
Intron Amino Acid Position:
313

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
81.2
32.7
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
73.5
0.53
0.9
66.3
39.9
Minor 5ss
41.5
-0.9
2.8
57
41.2
Minor BPS
70.4
0.62
1.6
75.49
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008405
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008724
29427402 - 29443236
15835