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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_29438109_29438383_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29438109 - 29438383
Intron Length:
275

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTAAGTGGA
5'SS Class:
major
3'SS Sequence:
TGTTCTTACGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
CCAGTTTTAATC
Flanking Amino Acid:
LNTAADPPFTSWRQKVFIKL
Intron Amino Acid Position:
356

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
67.9
37.5
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
77.6
0.62
0.9
73.5
36
Minor 5ss
33.9
-1.8
3.2
41.7
40.3
Minor BPS
52.1
0.05
1.4
53.34
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008405
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008724
29427402 - 29443236
15835