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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_29439715_29440810_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
29439715 - 29440810
Intron Length:
1096

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
AGATCTTGAATG
Flanking Amino Acid:
VNIIHGEDGRRSTLCGRGTV
Intron Amino Acid Position:
449

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
82.1
37.7
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
89.5
0.89
0.6
88.5
20.9
Minor 5ss
39.8
-1.1
2.8
52.3
44.3
Minor BPS
55.8
0.04
1.5
56.48
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008405
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008724
29427402 - 29443236
15835