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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_29443999_29444476_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29443999 - 29444476
Intron Length:
478

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACC|GTAAGTAGC
5'SS Class:
major
3'SS Sequence:
TCTACTGTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAC
U12 Branch Point Sequence:
TCTTTTTCTACT
Flanking Amino Acid:
MEFQGCTMFGIGIFALL
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.8
0.47
1.3
67.4
44
Major BPS
63.9
0.35
1.3
64.5
42.5
Major PPT
73.7
0.53
0.9
65.5
40.9
Minor 5ss
37.9
-1.4
2.7
50.5
39.2
Minor BPS
53.7
0.2
1.9
75.28
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008682
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009128
29443978 - 29458746
14769