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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_29444526_29445065_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29444526 - 29445065
Intron Length:
540

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
CTACATGTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TCATTCAGAAAT
Flanking Amino Acid:
FALLLLNTAKGSEVCYDRLG
Intron Amino Acid Position:
24

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99
1.15
0.6
96.2
11.9
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
71.7
0.49
1
64.2
41.1
Minor 5ss
39.3
-1.2
2.8
50.9
45.5
Minor BPS
48.4
-0
1.8
67.91
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008682
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009128
29443978 - 29458746
14769