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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_29445221_29445812_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29445221 - 29445812
Intron Length:
592

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
ATATCTACAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
ATATCTACAACA
Flanking Amino Acid:
YTRENPNNYQAISAVDSATI
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.1
1.02
0.7
87.2
27
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
66
0.36
1
60.4
39.5
Minor 5ss
36.1
-1.6
3
50.2
45.8
Minor BPS
53.6
0.11
1.8
68.29
37.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008682
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009128
29443978 - 29458746
14769