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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_29445939_29448076_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29445939 - 29448076
Intron Length:
2138

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTTTACAAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
TTTTACAAAACA
Flanking Amino Acid:
EEAWLSDMCKRLLTVEDVNC
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
86.2
29.3
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
68.9
0.43
1
64.3
40.3
Minor 5ss
44.5
-0.6
2.5
60.9
43.5
Minor BPS
55.4
0.17
2.1
77.56
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008682
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009128
29443978 - 29458746
14769